Test File 5 test-fm_load_data.R
Summary
Number of test(s) : 1
Number of expectation(s) : 42
Number of successful expectation(s) : 30
Number of failed expectation(s) : 0
Number of errored expectation(s) : 0
Number of expectations with warning(s) : 0
Number of validated skip expectation(s) : 0
Number of skipped expectation(s) : 12
Details
| Test | Description | Expectation | Result | Location | Test_time |
|---|---|---|---|---|---|
| fm_load_data works | Testing the inputs of fm_load_data are correct |
expect_error(object = fm_load_data(fitted_data = “notagoodinput”), regexp = “‘arg’ should be one of .biomass., .presabs.”) | ✅ Success | test-fm_load_data.R#22 | 2023-04-13 12:24:14 |
| fm_load_data works | expect_error(object = fm_load_data(time_step = “notagoodinput”), regexp = “‘arg’ should be one of .Month., .Quarter.”) | ✅ Success | test-fm_load_data.R#24 | 2023-04-13 12:24:14 | |
| fm_load_data works | NA (was skipped) | # Update expected outputs here | 🔄 Skipped | test-fm_load_data.R#70 | NA (was skipped) |
| fm_load_data works | NA (was skipped) | expect_true( | 🔄 Skipped | test-fm_load_data.R#94 | NA (was skipped) |
| fm_load_data works | NA (was skipped) | expect_true( | 🔄 Skipped | test-fm_load_data.R#103 | NA (was skipped) |
| fm_load_data works | Testing the result of fm_load_data is a list |
expect_type(object = fm_data_inputs, “list”) | ✅ Success | test-fm_load_data.R#116 | 2023-04-13 12:24:27 |
| fm_load_data works | Testing names of the list return by fm_load_data |
expect_named( object = fm_data_inputs, expected = c( “species”, “b_com_i”, “mesh”, “time.step_df”, “loc_x”, “y_com_i”, “y_sci_i”, “cov_x_com”, “cov_x_sci”, “c_com_x”, “t_com_i”, “t_sci_i”, “spde”, “Aix_ij_com”, “Aix_w_com”, “Aix_ij_sci”, “Aix_w_sci”, “cov_x_pred”, “Aix_ij_pred”, “Aix_w_pred”, “W”, “n_survey”, “MeshList_aniso” ) ) | ✅ Success | test-fm_load_data.R#119 | 2023-04-13 12:24:27 |
| fm_load_data works | NA (was skipped) | expected = c( | 🔄 Skipped | test-fm_load_data.R#121 | NA (was skipped) |
| fm_load_data works | Testing types inside the list returned by fm_load_data |
expect_type(fm_data_inputs[[“species”]], “character”) | ✅ Success | test-fm_load_data.R#149 | 2023-04-13 12:24:27 |
| fm_load_data works | Testing types inside the list returned by fm_load_data |
expect_type(fm_data_inputs[[“b_com_i”]], “double”) | ✅ Success | test-fm_load_data.R#150 | 2023-04-13 12:24:27 |
| fm_load_data works | expect_s3_class(fm_data_inputs[[“mesh”]], “inla.mesh”) | ✅ Success | test-fm_load_data.R#151 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_s3_class(fm_data_inputs[[“time.step_df”]], “data.frame”) | ✅ Success | test-fm_load_data.R#152 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_s3_class(fm_data_inputs[[“loc_x”]], “data.frame”) | ✅ Success | test-fm_load_data.R#153 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_type(fm_data_inputs[[“y_com_i”]], “double”) | ✅ Success | test-fm_load_data.R#154 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_type(fm_data_inputs[[“y_sci_i”]], “double”) | ✅ Success | test-fm_load_data.R#155 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_true(is.matrix(fm_data_inputs[[“cov_x_com”]])) | ✅ Success | test-fm_load_data.R#156 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_true(is.matrix(fm_data_inputs[[“cov_x_sci”]])) | ✅ Success | test-fm_load_data.R#157 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_true(is.array(fm_data_inputs[[“c_com_x”]])) | ✅ Success | test-fm_load_data.R#158 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_type(fm_data_inputs[[“t_com_i”]], “integer”) | ✅ Success | test-fm_load_data.R#159 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_type(fm_data_inputs[[“t_sci_i”]], “integer”) | ✅ Success | test-fm_load_data.R#160 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_type(fm_data_inputs[[“spde”]], “list”) | ✅ Success | test-fm_load_data.R#161 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_true(is.matrix(fm_data_inputs[[“Aix_ij_com”]])) | ✅ Success | test-fm_load_data.R#162 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_type(fm_data_inputs[[“Aix_w_com”]], “double”) | ✅ Success | test-fm_load_data.R#163 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_true(is.matrix(fm_data_inputs[[“Aix_ij_sci”]])) | ✅ Success | test-fm_load_data.R#164 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_type(fm_data_inputs[[“Aix_w_sci”]], “double”) | ✅ Success | test-fm_load_data.R#165 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_true(is.matrix(fm_data_inputs[[“cov_x_pred”]])) | ✅ Success | test-fm_load_data.R#166 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_true(is.matrix(fm_data_inputs[[“Aix_ij_pred”]])) | ✅ Success | test-fm_load_data.R#167 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_type(fm_data_inputs[[“Aix_w_pred”]], “double”) | ✅ Success | test-fm_load_data.R#168 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_type(fm_data_inputs[[“W”]], “double”) | ✅ Success | test-fm_load_data.R#169 | 2023-04-13 12:24:27 | |
| fm_load_data works | expect_type(fm_data_inputs[[“n_survey”]], “double”) | ✅ Success | test-fm_load_data.R#170 | 2023-04-13 12:24:28 | |
| fm_load_data works | expect_type(fm_data_inputs[[“MeshList_aniso”]], “list”) | ✅ Success | test-fm_load_data.R#171 | 2023-04-13 12:24:28 | |
| fm_load_data works | Testing that tmpdir of the mesh exists | expect_true(dir.exists(mesh_dir)) | ✅ Success | test-fm_load_data.R#178 | 2023-04-13 12:24:28 |
| fm_load_data works | Testing that tmpdir of the mesh exists | expect_true(dir.exists(mesh_aniso_dir)) | ✅ Success | test-fm_load_data.R#179 | 2023-04-13 12:24:28 |
| fm_load_data works | NA (was skipped) | expected_outputs <- readr::read_rds( | 🔄 Skipped | test-fm_load_data.R#184 | NA (was skipped) |
| fm_load_data works | NA (was skipped) | expected_outputs <- readr::read_rds( | 🔄 Skipped | test-fm_load_data.R#191 | NA (was skipped) |
| fm_load_data works | NA (was skipped) | expected_outputs$mesh$meta$prefix <- | 🔄 Skipped | test-fm_load_data.R#197 | NA (was skipped) |
| fm_load_data works | NA (was skipped) | expected_outputs$MeshList_aniso$anisotropic_spde$mesh$meta$prefix <- | 🔄 Skipped | test-fm_load_data.R#199 | NA (was skipped) |
| fm_load_data works | NA (was skipped) | resorted_expected <- resort_all(expected_outputs) | 🔄 Skipped | test-fm_load_data.R#217 | NA (was skipped) |
| fm_load_data works | NA (was skipped) | attr(resorted_expected$loc_x$long, which = “names”) <- NULL | 🔄 Skipped | test-fm_load_data.R#222 | NA (was skipped) |
| fm_load_data works | NA (was skipped) | attr(resorted_expected$loc_x$lati, which = “names”) <- NULL | 🔄 Skipped | test-fm_load_data.R#223 | NA (was skipped) |
| fm_load_data works | Testing that the result of fm_load_data is stable |
expect_equal(object = resorted_result, expected = resorted_expected) | ✅ Success | test-fm_load_data.R#226 | 2023-04-13 12:24:28 |
| fm_load_data works | NA (was skipped) | expected = resorted_expected) | 🔄 Skipped | test-fm_load_data.R#227 | NA (was skipped) |